% 'AMP'


config('AMP',[
        substituent('D-1-dehydroxy-5-oxy-ribofuranosyl'),
        substituent(adenyl),
        substituent(phosphoryl),
        linkage(from('D-1-dehydroxy-5-oxy-ribofuranosyl',car(1)),
                to(adenyl,nit(9)),
                up,single),
        linkage(from(phosphoryl,pho(1)),
                to('D-1-dehydroxy-5-oxy-ribofuranosyl',attach_to([oxy,car(5)])),
                nil,single)]).

%%%% Substituent Config Rules for compound 'AMP' %%%%

config('D-1-dehydroxy-5-oxy-ribofuranosyl',[
        ring([
                oxy,
                anomeric(1,hyd),
                car(2,hyd&&hydroxyl),
                car(3,hyd&&hydroxyl),
                car(4,oxymethyl&&hyd)])]).

config(adenyl,[
        model(adenine,[
                diff(nit(9,hyd),nit(9))])]).

%%%% Model/Diff Config Rules for compound adenyl %%%%

config(adenine,[
        model(purine,[
                diff(car(6,hyd),car(6,amine(10)))])]).

%%%% Model/Diff Config Rules for compound adenine %%%%

config(purine,[
        ring_system([
                ring([
                        car(6,hyd)&,
                        car(5)&,
                        car(4)&,
                        nit(3)&,
                        car(2,hyd)&,
                        nit(1)&]),
                ring([
                        nit(7)&,
                        car(8,hyd)&,
                        nit(9,hyd)&,
                        car(4)&,
                        car(5)&])],
                conjugate(1,pseudopos([car(4),car(5)]),2,pseudopos([car(4),car(5)]))])]).