L-arginine

Synonyms :

• L-ARGININE
• Arg
• R

Config Rule :

config('L-arginine',[
        substituent(aminoacid_L_backbone),
        substituent(propodiylguanidyl),
        linkage(from(aminoacid_L_backbone,car(1)),
                to(propodiylguanidyl,car(1)),
                down,single)]).

%%%% Substituent Config Rules for compound 'L-arginine' %%%%

config(aminoacid_L_backbone,[
        left(amino),
        right(hyd),
        top(carboxyl),
        center(car(1))]).

config(propodiylguanidyl,[
        substituent(propodiyl),
        substituent(guanidyl),
        linkage(from(propodiyl,car(3)),
                to(guanidyl,nit(1)),
                nil,single)]).

%%%% Substituent Config Rules for compound propodiylguanidyl %%%%

config(propodiyl,[
        top(methandiyl(1,empty)),
        center(methandiyl),
        bottom(methandiyl(3,empty))]).

Smiles String :

[C@2H]([NH3+])([C](=[O])[O-])[C@2H2][C@2H2][C@2H2][NH][C](=[NH2])[NH2]

'L-arginine'

Fischer Diagram :

Terminal :

% 'L-arginine'

c(1,12,(0,chiral))-[n(1,left)~,h(1,right)~,c(2,up)~,c(3,down)~],
c(2,12,(0,nonchiral))-[o(1,nil)?,o(2,nil)?,c(1,down)~],
c(3,12,(0,nonchiral))-[c(4,left)~,h(7,right)~,c(1,up)~,h(8,down)~],
c(4,12,(0,nonchiral))-[c(5,left)~,c(3,right)~,h(5,up)~,h(6,down)~],
c(5,12,(0,nonchiral))-[h(9,left)~,c(4,right)~,n(2,up)~,h(10,down)~],
c(6,12,(0,nonchiral))-[n(4,nil)?,n(3,nil)?,n(2,nil)?],
h(1,1,(0,nonchiral))-[c(1,left)~],
h(2,1,(0,nonchiral))-[n(1,right)~],
h(3,1,(0,nonchiral))-[n(1,down)~],
h(4,1,(0,nonchiral))-[n(1,up)~],
h(5,1,(0,nonchiral))-[c(4,down)~],
h(6,1,(0,nonchiral))-[c(4,up)~],
h(7,1,(0,nonchiral))-[c(3,left)~],
h(8,1,(0,nonchiral))-[c(3,up)~],
h(9,1,(0,nonchiral))-[c(5,right)~],
h(10,1,(0,nonchiral))-[c(5,up)~],
h(11,1,(0,nonchiral))-[n(2,nil)~],
h(12,1,(0,nonchiral))-[n(3,nil)~],
h(13,1,(0,nonchiral))-[n(3,nil)~],
h(14,1,(0,nonchiral))-[n(4,nil)~],
h(15,1,(0,nonchiral))-[n(4,nil)~],
n(1,14,(1,nonchiral))-[h(2,left)~,c(1,right)~,h(3,up)~,h(4,down)~],
n(2,14,(0,nonchiral))-[c(6,nil)?,h(11,nil)~,c(5,down)~],
n(3,14,(3.333333333333333E-01,nonchiral))-[h(12,nil)~,h(13,nil)~,c(6,nil)?],
n(4,14,(3.333333333333333E-01,nonchiral))-[h(14,nil)~,h(15,nil)~,c(6,nil)?],
o(1,16,(-5.0E-01,nonchiral))-[c(2,nil)?],
o(2,16,(-5.0E-01,nonchiral))-[c(2,nil)?]

The Terminals for all the Config Rules are in Prolog Definite Clause Grammar (DCG) form.They can be checked in the Manual here.

The compound's PDB file can be seen here.

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